SubtiBank SubtiBank
ydgC [2019-09-02 11:34:34]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ydgC [2019-09-02 11:34:34]

similar to transcription factor ([SW|TetR family])
locus
BSU_05580
pI
5.57
mw
21.92 kDa
protein length
195 aa Sequence Blast
gene length
588 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    603,012 603,599

    The protein

    Protein family

  • [SW|TetR family]

    • Structure

  • [PDB|5GPA] ([protein|8A8F93BAD0582F712C9EE1C3FE6C04292E91F390|FadR] from B. halodurans, 26% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|0C2CD998B933D7458DBC4E80A596801274AC43F9|ydgC]-[gene|6DD46B2E342994CB97C13C00AB264B2D62184223|ydgD]-[gene|07A30814F57112196051289AA309AE6DB22CAEFF|ydgE]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C157 (ydgC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2155 NBRP B. subtilis, Japan]
  • BKE05580 ([gene|0C2CD998B933D7458DBC4E80A596801274AC43F9|ydgC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTAGGACCACCCCAAAA, downstream forward: _UP4_CTTCCGAAAGGGAATGATGT
  • BKK05580 ([gene|0C2CD998B933D7458DBC4E80A596801274AC43F9|ydgC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTAGGACCACCCCAAAA, downstream forward: _UP4_CTTCCGAAAGGGAATGATGT